RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Firmicutes Clostridia Eubacteriales Lachnospiraceae Coprococcus Coprococcus comes 2 54 HMP/UHGG
Fusobacteria Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum 2 45 HMP/UHGG
Thermotogae Thermotogae Thermotogales Fervidobacteriaceae Thermosipho Thermosipho africanus 1 3 HMP
Firmicutes Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella parvula 4 26 HMP/UHGG
Coprothermobacterota Coprothermobacteria Coprothermobacterales Coprothermobacteraceae Coprothermobacter Coprothermobacter proteolyticus 1 3 HMP
Fusobacteria Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum 15 89 HMP/UHGG
Firmicutes Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Lentilactobacillus senioris 1 3 UHGG
Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii 2 33 UHGG
Firmicutes Bacilli Bacillales Bacillaceae Oceanobacillus Oceanobacillus jeddahense 1 3 UHGG
Firmicutes Clostridia Eubacteriales Lachnospiraceae Roseburia Roseburia faecis 1 13 UHGG