RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas campestris 1 167 HMP
Actinobacteria Actinomycetia Propionibacteriales Nocardioidaceae Aeromicrobium Aeromicrobium massiliense 1 2 UHGG
Actinobacteria Actinomycetia Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum 5 550 HMP/UHGG
Firmicutes Bacilli Bacillales Paenibacillaceae Brevibacillus Brevibacillus massiliensis 1 2 UHGG
Cyanobacteria Unknown Nostocales Aphanizomenonaceae Cylindrospermopsis Cylindrospermopsis raciborskii 1 26 HMP
Firmicutes Clostridia Eubacteriales Clostridiaceae Hungatella Hungatella effluvii 1 2 UHGG
Proteobacteria Gammaproteobacteria Alteromonadales Idiomarinaceae Idiomarina Idiomarina loihiensis 1 7 HMP
Proteobacteria Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Nitrobacter Nitrobacter winogradskyi 1 3 HMP
Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Paenibacillus amylolyticus 1 10 UHGG
Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus infantarius 2 12 HMP/UHGG